PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026299P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family M-type_MADS
Protein Properties Length: 76aa    MW: 8469.99 Da    PI: 11.1381
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026299P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.93.6e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+ rqvtfskRr+g+lKKA+E+SvLC+a+va+i+fs++gkl+eyss
  MELO3C026299P1  9 KRIENKISRQVTFSKRRAGLLKKAHEISVLCEADVALIVFSTKGKLFEYSS 59
                    79***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.314161IPR002100Transcription factor, MADS-box
CDDcd002656.47E-35261No hitNo description
SuperFamilySSF554555.1E-29261IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-303859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRAGLLK KAHEISVLCE ADVALIVFST KGKLFEYSSD  60
SRLIPFFIPS ISTLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-19159159Myocyte-specific enhancer factor 2B
1tqe_Q4e-19159159Myocyte-specific enhancer factor 2B
1tqe_R4e-19159159Myocyte-specific enhancer factor 2B
1tqe_S4e-19159159Myocyte-specific enhancer factor 2B
3mu6_A3e-19259158Myocyte-specific enhancer factor 2A
3mu6_B3e-19259158Myocyte-specific enhancer factor 2A
3mu6_C3e-19259158Myocyte-specific enhancer factor 2A
3mu6_D3e-19259158Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818681e-124LN681868.1 Cucumis melo genomic scaffold, anchoredscaffold00090.
GenBankLN7132611e-124LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137262.11e-35PREDICTED: truncated transcription factor CAULIFLOWER A isoform X1
RefseqXP_008464588.12e-36PREDICTED: truncated transcription factor CAULIFLOWER D
SwissprotQ388762e-34AGL8_ARATH; Agamous-like MADS-box protein AGL8
TrEMBLA0A103Y4Z65e-37A0A103Y4Z6_CYNCS; Transcription factor, MADS-box
STRINGPOPTR_0017s13400.13e-35(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-35AGAMOUS-like 8